PROGRAM closest_member_tool

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$Id: closest_member_tool.html 12664 2018-06-12 22:04:36Z nancy@ucar.edu $

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Overview

Utility program to compare the ensemble mean to a group of ensemble member restart files, which can now be run in parallel. The program prints out a sorted order of which members are 'closest' to the mean, where the method used to determine 'close' is selectable by namelist option. It also creates a file with a single number or character string in it, for ease in scripting, which identifies the closest member.

The ensemble mean is computed from the input ensemble. The difference is computed point by point across the ensemble members. There is an option to restrict the computation to just a subset of the entire state vector by listing one or more generic quantities. In this case, only state vector items matching one of these quantities will contribute to the total difference value.

Available methods are:

1 - simple absolute difference:
The absolute value of the difference between each item in the mean vector and the corresponding item in each ensemble member, accumulated over the entire state vector.
2 - normalized absolute difference:
The absolute value of the difference between each item in the mean vector and the corresponding item in each ensemble member normalized by the mean value, accumulated over the entire state vector.
3 - simple RMS difference:
The square root of the accumulated sum of the square of the difference between each item in the mean vector and the corresponding item in each ensemble member.
4 - normalized RMS difference:
The square root of the accumulated sum of the square of the normalized difference between each item in the mean vector and the corresponding item in each ensemble member.

This program could be used to select one or more ensemble members to run a free model forecast forward in time after the assimilation is finished. Each member is an equally likely representation of the model state. Using the ensemble mean may not be the best since the mean may not have self-consistent fine-scale structures in the data.

In addition to printing out data about all members to both the console and to the dart log file, this program creates a single output file containing information about the closest member. If the input restart data is in a single file, the output file 'closest_restart' contains a single number which is the ensemble member number. If the input restart data is in separate files, the output file contains the full filename of the closest member, e.g. 'filter_restart.0004' if member 4 is closest. For scripting the contents of this file can be used to copy the corresponding member data and convert it to the model input format for a free forecast, for example.

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NAMELIST

This namelist is read from the file input.nml. Namelists start with an ampersand '&' and terminate with a slash '/'. Character strings that contain a '/' must be enclosed in quotes to prevent them from prematurely terminating the namelist.

&closest_member_tool_nml
   input_restart_files     = ''
   input_restart_file_list = ''      
   output_file_name        = 'closest_restart'
   ens_size                = 1
   difference_method       = 4      
   use_only_qtys           = ''
   single_restart_file_in  = .false.      
  /
Item Type Description
input_restart_files character(len=256),dimension(ens_size x num_domains) An array of filenames each containing a list DART restart data.
input_restart_file_list character(len=256),dimension(num_domains) A file containing a list of filenames for DART restart data, one for each domain.
output_file_name character(len=256) This is a file containing the member number that is closest to the ensemble mean.
ens_size integer Total number of ensemble members.
difference_method integer Select which method is used to compute 'distance' from mean:
  • 1 = simple absolute difference
  • 2 = absolute difference normalized by the mean
  • 3 = simple RMS difference
  • 4 = RMS of the normalized difference
use_only_quantities character(len=32) If unspecified, all items in the state vector contribute to the total difference. If one or more quantities are listed here, only items in the state vector of these quantities contribute to the total difference. These are the generic quantities, such as QTY_TEMPERATURE, QTY_U_WIND_COMPONENT, QTY_DENSITY, etc. and not specific types like RADIOSONDE_TEMPERATURE. Consult the model interface code to determine which possible quantities are returned by the get_state_meta_data() routine.

Below is an example of a typical namelist for the closest_member_tool.

&closest_member_tool_nml
   input_restart_files     = ''
   input_restart_file_list = 'restart_list.txt'      
   output_file_name        = 'closest_restart.txt'
   ens_size                = 3
   single_restart_file_in  = .false.      
   difference_method       = 4      
   use_only_qtys           = ''
  /

where restart_list.txt contains

cam_restart_0001.nc
cam_restart_0002.nc
cam_restart_0003.nc

Currently single_restart_file_in is not supported. This is typically used for simpler models that have built in model advances such as lorenz_96.





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FILES

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REFERENCES

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ERROR CODES and CONDITIONS

RoutineMessageComment
closest_member_tool Invalid method number Values 1-4 are supported

KNOWN BUGS

none

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FUTURE PLANS

none

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Terms of Use

DART software - Copyright UCAR. This open source software is provided by UCAR, "as is", without charge, subject to all terms of use at http://www.image.ucar.edu/DAReS/DART/DART_download

Contact: DART core group
Revision: $Revision: 12664 $
Source: $URL: https://svn-dares-dart.cgd.ucar.edu/DART/releases/Manhattan/assimilation_code/programs/closest_member_tool/closest_member_tool.html $
Change Date: $Date: 2018-06-12 16:04:36 -0600 (Tue, 12 Jun 2018) $
Change history:  try "svn log" or "svn diff"