| sim.Krig {fields} | R Documentation |
Generates exact (or approximate) random draws from the conditional distribution of a spatial process given specific observations. This is a useful way to characterize the uncertainty in the predicted process from data. This is known as conditional simulation in geostatistics or generating an ensemble prediction in the geosciences. sim.Krig.grid can generate a conditional sample for a large regular grid but is restricted to stationary correlation functions.
sim.Krig.standard(object, xp, M = 1, verbose = FALSE, sigma2 = NA, rho = NA) sim.Krig.grid(object, grid.list = NA, M = 1, nx = 40, ny = 40, xy=c(1,2), verbose = FALSE, sigma2 = NA, rho = NA, extrap = FALSE)
object |
A Krig object |
xp |
Locations where to evaluate the conditional process. |
M |
Number of draws from conditional distribution. |
verbose |
If true prints out intermediate information. |
sigma2 |
User specified value for nugget variance or measurement error. See Details below. |
rho |
User specified value for sill, or multiplier of spatial covariance function. See Detials below. |
grid.list |
Grid information for evaluating the conditional surface as a grid.list. |
nx |
Number of grid points in x. |
ny |
Number of grid points in y. |
xy |
A two element vector giving the positions for the "X" and "Y"
variables for the surface. The positions refer to the columns of the location
matrix used to define the multidimensional surface from the Krig object. This argument is
provided in lieu of generating the grid list. If a 4 dimensional surface
is fit to data then xy= c(2,4) will evaluate a surface using the
second and fourth variables with variables 1 and 3 fixed at their median
values. NOTE: this argument is ignored if a grid.list argument is
passed. |
extrap |
If FALSE conditional process is not evaluated outside the convex hull of observations. |
These functions generate samples from a conditional multivariate distribution that describes the uncertainty in the estimated spatial process under Gaussian assumptions. An important approximation throughout these functions is that all covariance parameters are fixed at their estimated or prescribed values.
Given a spatial process Z(x)= P(x) + h(x) observed at
Y.k = P(x.k) + h(x.k) + e.k
where P(x) is a low order, fixed polynomial and h(x) a Gaussian spatial process. With Y= Y.1, ..., Y.N, the goal is to sample the conditional distribution of the process.
[Z(x) | Y ]
For fixed a covariance this is just a multivariate normal sampling problem.
sim.Krig.standard samples this conditional process at the points
xp and is exact for fixed covariance parameters.
sim.Krig.grid also assumes fixed covariance parameters and does
approxiamte sampling on a grid.
The outline of the algorithm is
0) Find the spatial prediction at the unobserved locations based on the actual data. Call this Z.hat(x).
1) Generate an unconditional spatial process and from this process simluate synthetic observations.
2) Use the spatial prediction model ( using the true covariance) to estimate the spatial process at unobserved locations.
3) Find the difference between the simulated process and its prediction based on synthetic observations. Call this e(x).
4) Z.hat(x) + e(x) is a draw from [Z(x) | Y ].
sim.Krig.standard follows this algorithm exactly.
sim.Krig.grid evaluates the
conditional surface on grid and simulates the values of h(x) off the grid using bilinear
interpolation of the four nearest grid points. Because of this approximation it is important to
choose the grid to be fine relative to the spacing of the observations. The advantage of this
approximation is that one can consider conditional simulation for large grids – beyond the
size possible with exact methods. Here the method for simulation is circulant embedding and
so is restricted to correlation stationary fields.
For sim.Krig.standard a matrix with columns indexed by the locations in xp and
M rows.
For sim.Krig.grid a list with arguments x and y defining the grid
locations in the usual manner and z contains the values of the simulated conditional
field(s). z is a three dimesional array where the first two indices are "x" and "y" and
the third index is between 1 and M and indexes the simulated fields.
Doug Nychka
sim.rf, Krig
data( ozone2)
set.seed( 399)
# fit to day 16 from Midwest ozone data set.
Krig( ozone2$lon.lat, ozone2$y[16,], Covariance="Matern",
theta=1.0,smoothness=1.0, na.rm=TRUE)-> out
# NOTE theta =1.0 is not the best choice but
# allows the sim.rf circulant embedding algorithm to
# work without increasing the domain.
#six missing data locations
xp<- ozone2$lon.lat[ is.na(ozone2$y[16,]),]
# 50 draws from process at xp given the data
# this is an exact calculation
sim.Krig.standard( out,xp, M=50)-> sim.out
# Compare: stats(sim.out)[3,] to Exact: predict.se( out, xp)
# simulations on a grid
# NOTE this is approximate due to the bilinear interpolation
# for simulating the unconditional random field.
sim.Krig.grid(out,M=5)-> sim.out
# take a look at the ensemble members.
predict.surface( out, grid= list( x=sim.out$x, y=sim.out$y))-> look
zr<- c( 40, 200)
set.panel( 3,2)
image.plot( look, zlim=zr)
title("mean surface")
for ( k in 1:5){
image( sim.out$x, sim.out$y, sim.out$z[,,k], col=tim.colors(), zlim =zr)
}